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Hu-binding site

Web26 Feb 2024 · Starting from a query sequence and predicted I-TASSER models, ATPbind can achieve an average accuracy of 72%, covering 62% of all ATP binding sites while achieving a Matthews correlation coefficient value that is significantly higher than that of other state-of-the-art predictors. Publication types Research Support, N.I.H., Extramural Web15 Jun 1997 · Site-specific binding of HU is promoted by GalR binding and supercoiled DNA. Affinity cleavage mapping by chemically converting HU into a nuclease gives …

Time-dependent bending rigidity and helical twist of DNA by ...

Web3 Jun 1994 · We have recently identified one such high affinity binding site at the Mu left end by converting HU into a chemical nuclease (Lavoie and Chaconas, 1993). Using … Web19 Mar 2024 · The PWSM has been successfully used in the prediction of transcription factor binding sites and ligand binding sites (Kel et al., 2003; Hu et al., 2016a). Thus, the position weight scoring matrix (PWSM) was used to extract the position conservation information of the basic feature parameters, and the scoring matrix based on amino acid … newcastle university gavin richardson https://dripordie.com

Flexibility of the NSAID binding site in the structure of human ...

WebThe binding sites in c-Fos, interleukin-3, c-Myc, Tau, IVA 2 , and GAP-43 mRNAs are shown. ... Neuronal ELAV/Hu (nELAV) are RNA-binding proteins that mainly regulate … Web4 Jul 2013 · The dimer to base pair ratio at 50 nM HU is 1:8. This ratio can be considered as the onset of the high concentration regime. It has been reported that HU binds non-specifically to a 9 bp binding site at high concentrations of HU ( 20, 22, 31). In all aforementioned cases, 50 nM HU (1 dimer: 8 bp), a temporary stiffening is observed, … Web3 Aug 2009 · Depending on the interacting partner, the binding sites on proteins can be divided into different categories, such as DNA-binding sites, RNA-binding sites, … newcastle university freshers week

HU binds and folds single-stranded DNA - Oxford Academic

Category:The histone-like protein HU binds specifically to DNA …

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Hu-binding site

Time-dependent bending rigidity and helical twist of DNA by ...

Web1 Mar 2008 · HU binding to ssDNA, dsDNA and nick in low salt conditions. HU protein, at the concentration indicated in nM on the bottom, was mixed with end-labeled DNA, 40-bp long dsDNA, the same DNA with a ... WebBinding Site provides specialist diagnostic products to clinicians and laboratory professionals worldwide. Our people are dedicated to improving patient lives, …

Hu-binding site

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Web4 Feb 2009 · In these conditions, the average spacing between HU binding sites on the chromosome would amount to ∼20 kb (Supplemental Figure S2). Interestingly, the bacterial nucleoid has been described as being shaped in domains of 50–100 kb [80] whereas more recent studies re-evaluated the organization of the chromosome in 400 supercoiled … Web30 Aug 2024 · The identification of metal ion binding sites is important for protein function annotation and the design of new drug molecules. This study presents an effective …

Web8 Jan 2024 · Transcription factor binding sites (TFBSs) are basic components of cis-regulatory elements, which act important roles in precise regulations of gene expressions … Initially, bacterial DNA binding proteins were thought to help stabilize bacterial DNA. Currently, many more functions of bacteria DNA binding proteins have been discovered, including the regulation of gene expression by histone-like nucleoid-structuring protein, H-NS. H-NS is about 15.6 kDa and assists in the regulation of bacterial transcription i…

Web19 Jun 2008 · The histone-like HU (heat unstable) protein plays a key role in the organization and regulation of the Escherichia coli genome. The nonspecific nature of HU binding to DNA complicates analysis of the mechanism by which the protein contributes to the looping of DNA. Web1 Dec 2000 · Introduction. Escherichia coli HU, a small, basic, heat-stable DNA binding protein, is one of the most abundant proteins associated with the E.coli nucleoid (Rouviere-Yaniv and Gros, 1975; Rouviere-Yaniv, 1978). In vitro, HU shares the ability observed with histones to introduce negative supercoiling into relaxed DNA molecules in the presence …

WebHU, a major component of the bacterial nucleoid, shares properties with histones, high mobility group proteins (HMGs), and other eukaryotic proteins. HU, which participates in many major pathways of the bacterial cell, binds without sequence specificity to duplex DNA but recognizes with high affinity DNA repair intermediates. international youth for christ of the wotccWeb7 Apr 2024 · ELAV/Hu RNA binding proteins determine multiple programs of neural alternative splicing - PMC Back to Top Skip to main content An official website of the United States government Here's how you know The .gov means it’s official. Federal government websites often end in .gov or .mil. international youth football tournaments 2017Web1 Nov 1996 · The structure of the NSAID binding site is also well conserved, although there are differences in its overall size and shape which may be exploited for the further … international youth hostel federation iyhfWebbound to its recognition site. Binding of HU is sequence un-speci¢c but, as is the case with IHF [7], binding to DNA probably involves its two arms being inserted into the minor groove. H-NS is similar in size to HU (15.6 kDa) and also binds DNA without sequence speci¢city. Unlike HU, this protein newcastle university gpWebPapain-like protease (PLpro) is a promising therapeutic target against SARS-CoV-2, but its restricted S1/S2 subsites pose an obstacle in developing active site-directed inhibitors. We have recently identified C270 as a novel covalent allosteric site for SARS-CoV-2 PLpro inhibitors. Here we present a theoreti newcastle university gender equality planWeb22 Mar 2011 · HU acts to compact DNA at physiological salt concentrations in vitro by introducing bends ranging from 53° to more than 140° in the DNA as assayed by X-ray … newcastle university gown hireWeb29 Apr 2014 · Site-directed mutagenesis of the putative C/EBPα binding sites decreased FTO promoter activity. Overexpression and RNAi studies also indicated that C/EBP α was required for the expression of FTO. Chromatin immunoprecipitation (ChIP) experiment was carried out and the result shows direct binding of C/EBP α to the putative binding … newcastle university gps staff